PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family FAR1
Protein Properties Length: 256aa    MW: 29658.4 Da    PI: 5.5096
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010840genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.61.5e-2675165190
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                +fY +Y+++vGF+vr++++++s+ n++++ ++fvCskeg+r+++    +++     + tr gC+a++++ +++ gkw vtk++++HnH l 
  Cla010840  75 EFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCrKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLL 165
                6*****************************************9987723333448899******************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2375165IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDCQSSHTFD SDESDIDIQT EIYEKGGSID DIRNDLDFCL RDDDKVAEQS VVDLPMDGVE  60
PYIGMEFSSR DEAREFYVNY GRRVGFTVRI HHNRRSRVNN QVIGQDFVCS KEGFRAKKYV  120
CRKDRILPAP PITREGCQAM MRLALRDGGK WAVTKFVKDH NHLLLSPSKV PWRGSGKNLL  180
SEDEKDKRIR ELSVELYNER QKYKRKCAAY EEQLKTILKE VEMHTECISN KVAEVVKSIR  240
EVEEEEESGG LNEGWI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453975.11e-179PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0A0KW491e-178A0A0A0KW49_CUCSA; Uncharacterized protein
STRINGGLYMA13G41920.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88613044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.14e-38FAR1 family protein